21,479     S (Spike)   CAACUAAACGAACAUG                    
27,852        ORF 11   CUAAUAAACCUCAUG                     
27,766        ORF 10   AGUCUAAACGAACAUG                    
27,766        ORF 10   AGUCUAAACGAACAUG                    
27,001         ORF 7   AACUAUAAAUU (62) AUG                
27,259         ORF 8   UCCAUAAAACGAACAUG                   
27,259         ORF 8   UCCAUAAAACGAACAUG                   
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
27,766        ORF 10   AGUCUAAACGAACAUG                    
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
21,479     S (Spike)   CAACUAAACGAACAUG                    
25,252         ORF 3   CACAUAAACGAACUUAUG                  
27,259         ORF 8   UCCAUAAAACGAACAUG                   
27,259         ORF 8   UCCAUAAAACGAACAUG                   
27,259         ORF 8   UCCAUAAAACGAACAUG                   
21,479     S (Spike)   CAACUAAACGAACAUG                    
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
26,104      Envelope   UGAGUACGAACUUAUG                    
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,001         ORF 7   AACUAUAAAUU (62) AUG                
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,766        ORF 10   AGUCUAAACGAACAUG                    
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,852        ORF 11   CUAAUAAACCUCAUG                     
25,252         ORF 3   CACAUAAACGAACUUAUG                  
27,259         ORF 8   UCCAUAAAACGAACAUG                   
26,104      Envelope   UGAGUACGAACUUAUG                    
27,259         ORF 8   UCCAUAAAACGAACAUG                   
26,104      Envelope   UGAGUACGAACUUAUG                    
27,766        ORF 10   AGUCUAAACGAACAUG                    
26,104      Envelope   UGAGUACGAACUUAUG                    
25,252         ORF 3   CACAUAAACGAACUUAUG                  
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
27,001         ORF 7   AACUAUAAAUU (62) AUG                
27,766        ORF 10   AGUCUAAACGAACAUG                    
21,479     S (Spike)   CAACUAAACGAACAUG                    
26,104      Envelope   UGAGUACGAACUUAUG                    
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
26,104      Envelope   UGAGUACGAACUUAUG                    
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
21,479     S (Spike)   CAACUAAACGAACAUG                    
21,479     S (Spike)   CAACUAAACGAACAUG                    
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
27,001         ORF 7   AACUAUAAAUU (62) AUG                
27,852        ORF 11   CUAAUAAACCUCAUG                     
27,001         ORF 7   AACUAUAAAUU (62) AUG                
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,852        ORF 11   CUAAUAAACCUCAUG                     
27,259         ORF 8   UCCAUAAAACGAACAUG                   
27,766        ORF 10   AGUCUAAACGAACAUG                    
27,852        ORF 11   CUAAUAAACCUCAUG                     
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
21,479     S (Spike)   CAACUAAACGAACAUG                    
26,104      Envelope   UGAGUACGAACUUAUG                    
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
21,479     S (Spike)   CAACUAAACGAACAUG                    
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
21,479     S (Spike)   CAACUAAACGAACAUG                    
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
26,104      Envelope   UGAGUACGAACUUAUG                    
21,479     S (Spike)   CAACUAAACGAACAUG                    
27,259         ORF 8   UCCAUAAAACGAACAUG                   
25,252         ORF 3   CACAUAAACGAACUUAUG                  
26,104      Envelope   UGAGUACGAACUUAUG                    
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
27,766        ORF 10   AGUCUAAACGAACAUG                    
27,001         ORF 7   AACUAUAAAUU (62) AUG                
27,590         ORF 9   UGCUCUA---GUAUUUUUAAUACUUUG (24) AUG
26,341             M   GGUCUAAACGAACUAACU (40) AUG         
27,852        ORF 11   CUAAUAAACCUCAUG                     
    60        Leader   UCUCUAAACGAACUUUAAAAUCUGUG          
27,001         ORF 7   AACUAUAAAUU (62) AUG                
27,766        ORF 10   AGUCUAAACGAACAUG                    
28,099  Nucleocapsid   UAAAUAAACGAACAAAUUAAAAUG            
27,001         ORF 7   AACUAUAAAUU (62) AUG                
 

 
N protein   28,120-29,388     422    1,269   +1   Strong   N  
   ORF 11   27,864-28,118      84      255   +3   Weak     X5 
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
   ORF 1a      265-13,398   4,382   13,149   +1   N/A     1a  
S protein   21,492-25,259   1,255    3,768   +3   Strong   S  
E protein   26,117-26,347      76      231   +2   Weak     E  
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
    ORF 7   27,074-27,265      63      192   +2   Weak     X3 
    ORF 3   25,268-26,092     274      825   +2   Strong   X1 
   ORF 11   27,864-28,118      84      255   +3   Weak     X5 
    ORF 8   27,273-27,641     122      369   +3   Strong   X4 
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
   ORF 11   27,864-28,118      84      255   +3   Weak     X5 
s2m motif   29,590-29,621     N/A       30  N/A   N/A      N/R
    ORF 9   27,638-27,772      44      135   +2   Weak     N/R
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
    ORF 9   27,638-27,772      44      135   +2   Weak     N/R
    ORF 7   27,074-27,265      63      192   +2   Weak     X3 
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
E protein   26,117-26,347      76      231   +2   Weak     E  
   ORF 1a      265-13,398   4,382   13,149   +1   N/A     1a  
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
    ORF 8   27,273-27,641     122      369   +3   Strong   X4 
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
N protein   28,120-29,388     422    1,269   +1   Strong   N  
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
N protein   28,120-29,388     422    1,269   +1   Strong   N  
S protein   21,492-25,259   1,255    3,768   +3   Strong   S  
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
S protein   21,492-25,259   1,255    3,768   +3   Strong   S  
S protein   21,492-25,259   1,255    3,768   +3   Strong   S  
    ORF 7   27,074-27,265      63      192   +2   Weak     X3 
M protein   26,398-27,063     221      666   +1   Strong   M  
    ORF 9   27,638-27,772      44      135   +2   Weak     N/R
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
M protein   26,398-27,063     221      666   +1   Strong   M  
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
    ORF 3   25,268-26,092     274      825   +2   Strong   X1 
   ORF 1a      265-13,398   4,382   13,149   +1   N/A     1a  
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
   ORF 1a      265-13,398   4,382   13,149   +1   N/A     1a  
M protein   26,398-27,063     221      666   +1   Strong   M  
E protein   26,117-26,347      76      231   +2   Weak     E  
   ORF 10   27,779-27,898      39      120   +2   Strong   N/R
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
s2m motif   29,590-29,621     N/A       30  N/A   N/A      N/R
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
   ORF 1a      265-13,398   4,382   13,149   +1   N/A     1a  
    ORF 4   25,689-26,153     154      465   +3   Absent   X2 
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
    ORF 7   27,074-27,265      63      192   +2   Weak     X3 
s2m motif   29,590-29,621     N/A       30  N/A   N/A      N/R
M protein   26,398-27,063     221      666   +1   Strong   M  
M protein   26,398-27,063     221      666   +1   Strong   M  
   ORF 13   28,130-28,426      98      297   +2   Absent   N/R
 

 
16,622   C   A   T   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
16,622   C   A   T   A     3   Replicase 1B          
26,857   T   S   C   P   X 1   M protein             
19,183   T   V   C   A     3   Replicase 1B          
16,622   C   A   T   A     3   Replicase 1B          
26,857   T   S   C   P   X 1   M protein             
24,872   T   L   C   L     3   S (Spike) glycoprotein
26,857   T   S   C   P   X 1   M protein             
19,183   T   V   C   A     3   Replicase 1B          
_7,919   C   A   T   V     1   Replicase 1A          
23,220   G   A   T   S   X 3   S (Spike) glycoprotein
24,872   T   L   C   L     3   S (Spike) glycoprotein
16,622   C   A   T   A     3   Replicase 1B          
25,298   A   R   G   G   X 2   ORF 3                 
16,622   C   A   T   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
26,857   T   S   C   P   X 1   M protein             
19,064   A   E   G   E     3   Replicase 1B          
_7,919   C   A   T   V     1   Replicase 1A          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
25,298   A   R   G   G   X 2   ORF 3                 
25,298   A   R   G   G   X 2   ORF 3                 
 

 
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
19,183   T   V   C   A     3   Replicase 1B          
 

 
00.042. Microviridae